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Single cell RNA-seq data analysis with Chipster
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scRNAseqChipster
6. Scale data and regress out unwanted sources of variation
Quiz: Scale data and regress out unwanted sources of variation
Quiz: Scale data and regress out unwanted sources of variation
◄ Quiz: Identify highly variable genes
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Chipster quick tour
Quiz: Introduction to Chipster
What kind of credentials are you using to log in to Chipster?
Quiz: Introduction to scRNA-seq
Discussion: What is your data like?
Quiz: Setup and QC
Quiz: Normalize gene expression values
Quiz: Identify highly variable genes
Quiz: Dimension reduction
Quiz: Clustering
Quiz: Comparing two samples
Final assignment: Share what you have learned
Discussion: Thoughts on Chipster
Course feedback
Quiz: Dimension reduction ►
scRNAseqChipster
About the course
1. Introduction to Chipster
2. Introduction to scRNA-seq
3. Set up a Seurat object and check the quality of cells
4. Normalize gene expression values
5. Identify highly variable genes
6. Scale data and regress out unwanted sources of variation
7. Dimension reduction
8. Cluster cells and detect marker genes for clusters
9. Comparing two samples
10. Test your skills
Course certificate and feedback
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