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Single-cell RNA-seq data analysis with Chipster

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Forum

Forum

Q&A Forum
H5P

H5P

Chipster quick tour
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Quiz: Introduction to Chipster
Choice

Choice

What kind of credentials are you using to log in to Chipster?
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Quiz: Introduction to scRNA-seq
Forum

Forum

Discussion: What is your data like?
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Quiz: Setup and QC
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Quiz: Normalize gene expression values
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Quiz: Identify highly variable genes
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Quiz: Scale data and regress out unwanted sources of variation
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Quiz: Dimension reduction
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Quiz: Clustering
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Quiz: Extracting information Seurat object
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Quiz: Annotating cells
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Quiz: Integrated analysis of two samples
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Quiz: Differential expression and pseudobulk analysis
Assignment

Assignment

Final assignment: Share what you have learned
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Methods and Software
Bioinformatics and Life Sciences
scRNAseqChipster
8. Cluster cells and detect marker genes for clusters
Quiz: Clustering

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Quiz: Clustering

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Quiz: Clustering

Completion requirements

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◄ Quiz: Dimension reduction

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Quiz: Extracting information Seurat object ►

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