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bioinformatics
Bioinformatics; containers; docker
chipster
Fundamentals
Machine Learning
puhti
rna-seq

Fundamentals Show all

Fundamentals of Machine Learning 2024

This two-day course aims at giving the fundamental, essential concepts of machine learning. The course focuses on simplified key concepts from statistical, probabilistic and computational principles, and their relation to machine learning. This will aid in interpreting and explaining, to an extent, a models behavior, and helping in evaluating is a machine learning approach feasible to a particular application. The course focuses on supervised and unsupervised approaches, and model selection.The course is organized on site at CSC. A Zoom option will be provided for those whom register to course but cannot make it on site. Hands-on exercises will be done using the Python language in CSC Notebooks environment (https://notebooks.csc.fi/).Learning outcomes: To obtain ideas on what to look out for when a given problem can be solved using supervised or unsupervised learning tools, is a machine learning suitable to your application, and focus on interpreting and explaining models.This course is for students, researchers or in industry that are new and wants to get into applying machine learning methods in their applications. Also those whom have been using machine learning might also benefit from this course.Prerequisites: Basics of the Python language is assumed but not mandatory. Additionally basic notions of statistics and probability will be beneficial, however basic notions will be explained as methods and approaches are introduced.

High Performance Computing Show all

CSC Puhti + R/RStudio Workshop

This course is tailored for users who have previous experience with R and want to get started using R in CSC supercomputers.

CSC Computing Environment

"This is what everyone should know about our HPC environment when launching jobs!"

CSC Prerequisite minicourse

To access and use supercomputers like Puhti and Mahti, you need to be able to work with text-based Command Line Interface (CLI). This is a new challenge to many people who are more used to using Graphical User Interfaces (GUI) in Windows and macOS. This course provides users with "basic command line skills" that are a prerequisite in many CSC courses. To make sure you get the most out of the other courses, please go through this material and skill tests first. Happy journey on the command line!

MBDP-108 Advanced Linux

This course builds upon the earlier Introduction to Linux course. We expect people to be familiar with the concepts of file-system related (ls, rm, mkdir, cd ...) commands and have a basic knowledge about the shell. At the end of the course the students should be able to build workflows inside bash and to use POSIX text utilities to search, reorder and modify larger data and files. In other words, to use the shell in production related to scientific computing.Program, December 16th 09:00 – 09:30 Morning coffee & registration 09:30 – 09:45 Introduction to the course 09:45 – 10:45 Recapping Introduction to Linux course 10:45 – 11:30 Working with the Bash shell, pt. I (shell internals) 11:30 – 12:30 Lunch 12:30 – 13:30 Working with the Bash shell, pt. II (programming constructs) 13:30 – 14:30 Pipes, named pipes and redirecting 14:30 – 15:00 Coffee 15:00 – 16:30 Hands-on exercises Program, December 17th 09:00 – 10:00 Pattern matching and regular expressions 10:00 – 10:30 Coffee 10:30 – 11:30 Shell commands and utilities (replacing spreadsheets) 11:30 – 12:30 Lunch 12:30 – 13:30 awk (rendering spreadsheets ridiculous) 13:30 – 14:30 Retrieving, compiling and running own programs 14:30 – 15:00 Coffee 15:00 – 16:30 Hands-on exercises

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