Startsida

allas
bioinformatics
Bioinformatics; containers; docker
chipster
puhti
rna-seq

CSC Computing Environment Visa alla

CSC Puhti + R/RStudio Workshop

This course is tailored for users who have previous experience with R and want to get started using R in CSC supercomputers.

CSC Computing Environment

"This is what everyone should know about our HPC environment when launching jobs!"

CSC Prerequisite minicourse

To access and use supercomputers like Puhti and Mahti, you need to be able to work with text-based Command Line Interface (CLI). This is a new challenge to many people who are more used to using Graphical User Interfaces (GUI) in Windows and macOS. This course provides users with "basic command line skills" that are a prerequisite in many CSC courses. To make sure you get the most out of the other courses, please go through this material and skill tests first. Happy journey on the command line!

MBDP-108 Advanced Linux

This course builds upon the earlier Introduction to Linux course. We expect people to be familiar with the concepts of file-system related (ls, rm, mkdir, cd ...) commands and have a basic knowledge about the shell. At the end of the course the students should be able to build workflows inside bash and to use POSIX text utilities to search, reorder and modify larger data and files. In other words, to use the shell in production related to scientific computing.Program, December 16th 09:00 – 09:30 Morning coffee & registration 09:30 – 09:45 Introduction to the course 09:45 – 10:45 Recapping Introduction to Linux course 10:45 – 11:30 Working with the Bash shell, pt. I (shell internals) 11:30 – 12:30 Lunch 12:30 – 13:30 Working with the Bash shell, pt. II (programming constructs) 13:30 – 14:30 Pipes, named pipes and redirecting 14:30 – 15:00 Coffee 15:00 – 16:30 Hands-on exercises Program, December 17th 09:00 – 10:00 Pattern matching and regular expressions 10:00 – 10:30 Coffee 10:30 – 11:30 Shell commands and utilities (replacing spreadsheets) 11:30 – 12:30 Lunch 12:30 – 13:30 awk (rendering spreadsheets ridiculous) 13:30 – 14:30 Retrieving, compiling and running own programs 14:30 – 15:00 Coffee 15:00 – 16:30 Hands-on exercises

Cloud Computing Visa alla

Cloud computing fundamentals course

The CSC cloud computing fundamentals course is a training course that provides the know-how required to efficiently use CSC’s Pouta cloud and CSC's Rahti cloud. For Pouta it mainly includes computing resources such as virtual machines and object storage in a scalable, automated, and on-demand fashion. And in the case of Rahti, it allows to run containers in a Kubernetes cluster.The target audience for this course includes graduate students, researchers, and IT professionals who aim to build and manage their research and education infrastructure and IT solutions in the cloud. To succeed in this course, trainees should be familiar with basic operating systems and networking concepts. Some familiarity with the Linux command line, web servers, and text editors is also necessary.

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